Welcome to dipwmsearch’s documentation!

Contents:

• Overview
  • Input / Output
  • Advantages
  • Concepts and useful pointers
• Installation
  • Installation using conda
  • Installation using pip
  • Local installation using git
  • Help with installation
• Examples, scripts, usage
  • Two ways of using this package
  • A starting example
  • Choosing a threshold ratio
  • Searching for a di-PWM in a sequence stored in FASTA file
  • Searching for a di-PWM using a P-value instead of a ratio threshold
  • Searching for a di-PWM on both strand of a sequence
  • Computing P-values of occurrences
  • Simplicity
• Description
  • Source code organization
• API
• License
  • CeCILL-B FREE SOFTWARE LICENSE AGREEMENT

Indices and tables

• Index

• Module Index

• Search Page